Notification of Results and Data Analysis
A typical hybridization will result in multiple raw data files. Users are notified by e-mail when the raw data is available for download from their account on this web site. The Core recognizes that many users will want help performing data analysis. Data analysis is provided through the Informatics/Bioinformatics Shared Service Researchers wishing to meet individually for data analysis and consultation should contact David Mount to schedule an appointment once all the relevant hybridizations have been completed. The website for the Informatics/Bioinformatics Shared Service is here.
Although we receive support from the UACC, the Southwest Environmental Health Science Center, and the BIO5 institute, we must recover costs not covered by these supporting institutions as follows (costs are per sample or array):
|DNA Sequencing (using either the Ion Torrent PGM or Proton)|
|Human Whole Exome Sequencing*||$950|
|46 gene cancer panel mutation analysis||$600.00|
|Custom gene panel sequencing||$300-600|
|Affymetrix Gene Expression Analysis:|
|ChIP on chip DNA methylation analysis (chip plus hyb)||$750|
|ChIP on chip histone acetylation analysis (chip plus hyb)||$750|
|miRNA expression analysis||$400|
|Affymetrix and Agilent chips for CGH, re-sequencing, and SNP analysis||$150-300|
|Self-service Microarray Scanning|
|Self service laser scanning of user-hybridized slides||$20.00 per 30 minutes|
|Real-Time PCR or RT/PCR||Self-service RT/PCR or PCR||$50 per plate|
|full service RT/PCR or PCR||$12 per reaction, includes RT|
|Sample Quality Control||Agilent Bioanalyzer ||$16 full service|
|Nanodrop spectrophotometry||$12/$4 full service/self service|
*The Genomics Core is a member of the "certified service provider" program.
**To avoid maintaining an inventory of chips that expire, the Core will assist users in purchasing their Affymetrix and Agilent microarray chips from the manufacturer. Please contact the Core for information on ordering and prices for specific microarrays.